Swati Jivanji

Doctor of Philosophy
Study Completed: 2022
College of Sciences

Citation

Thesis Title
The genetic characterisation of coat colour and patterning traits in cattle

Read article at Massey Research Online: MRO icon

Supervisors
Professor Dorian Garrick
Professor Matt Littlejohn
Professor Hugh Blair
Dr Goetz Laible

Page authorised by Web Content Manager
Last updated on Monday 04 April 2022

Catch
additional
Struct (ordered)
Detail
string
ErrorCode
string0
Extended_Info
string
ExtendedInfo
string
Message
stringStale file handle
StackTrace
stringlucee.runtime.exp.NativeException: Stale file handle at java.base/java.io.FileDescriptor.close0(Native Method) at java.base/java.io.FileDescriptor.close(FileDescriptor.java:297) at java.base/java.io.FileOutputStream$1.close(FileOutputStream.java:398) at java.base/java.io.FileDescriptor.closeAll(FileDescriptor.java:355) at java.base/java.io.FileOutputStream.close(FileOutputStream.java:396) at lucee.commons.io.res.util.ResourceOutputStream.close(ResourceOutputStream.java:50) at java.base/java.io.FilterOutputStream.close(FilterOutputStream.java:188) at lucee.runtime.functions.file.FileStreamWrapperWrite.close(FileStreamWrapperWrite.java:82) at lucee.runtime.functions.file.FileWrite.call(FileWrite.java:54) at massey.app_templates._pagetemplates._templatefiles.tmp_ot_wagtail.footer_auto_cfm$cf.call(/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/footer_auto.cfm:49) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:1056) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:948) at lucee.runtime.PageContextImpl.doInclude(PageContextImpl.java:929) at massey.app_templates._pagetemplates._templatefiles.tmp_ot_wagtail.base_cfm$cf.call(/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/base.cfm:106) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:1056) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:948) at lucee.runtime.PageContextImpl.doInclude(PageContextImpl.java:929) at massey.app_templates._pagetemplates.tmp_ot_wagtail_cfm$cf.call(/massey/app_templates/_pagetemplates/tmp_OT_wagtail.cfm:10) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:1056) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:948) at lucee.runtime.PageContextImpl.doInclude(PageContextImpl.java:929) at massey.app_templates.index_cfm$cf.call(/massey/app_templates/index.cfm:329) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:1056) at lucee.runtime.PageContextImpl._doInclude(PageContextImpl.java:948) at lucee.runtime.listener.ModernAppListener._onRequest(ModernAppListener.java:219) at lucee.runtime.listener.MixedAppListener.onRequest(MixedAppListener.java:44) at lucee.runtime.PageContextImpl.execute(PageContextImpl.java:2493) at lucee.runtime.PageContextImpl._execute(PageContextImpl.java:2478) at lucee.runtime.PageContextImpl.executeCFML(PageContextImpl.java:2449) at lucee.runtime.engine.Request.exe(Request.java:45) at lucee.runtime.engine.CFMLEngineImpl._service(CFMLEngineImpl.java:1216) at lucee.runtime.engine.CFMLEngineImpl.serviceCFML(CFMLEngineImpl.java:1162) at lucee.loader.engine.CFMLEngineWrapper.serviceCFML(CFMLEngineWrapper.java:97) at lucee.loader.servlet.CFMLServlet.service(CFMLServlet.java:51) at javax.servlet.http.HttpServlet.service(HttpServlet.java:623) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:199) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:144) at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:168) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:144) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:168) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:90) at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:482) at org.apache.catalina.valves.rewrite.RewriteValve.invoke(RewriteValve.java:287) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93) at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:660) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) at org.apache.catalina.valves.rewrite.RewriteValve.invoke(RewriteValve.java:532) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:130) at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:93) at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:660) at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:74) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:346) at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:396) at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:63) at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:937) at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1793) at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:52) at org.apache.tomcat.util.threads.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1190) at org.apache.tomcat.util.threads.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:659) at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:63) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: java.io.IOException: Stale file handle ... 63 more
TagContext
Array
1
Struct
codePrintHTML
string47: request.wagtail_footer = &quot;&lt;&quot; &amp; 'cfprocessingdirective pageEncoding=&quot;utf-8&quot;' &amp; &quot;&gt;#chr(10)#&quot;;<br> 48: request.wagtail_footer &amp;= reMatchNoCase(&quot;&lt;footer[^&gt;]*?&gt;.+?&lt;/footer&gt;&quot;, response.filecontent)[1];<br> <b>49: fileWrite(filePath=request.cacheWagtailFooterFile, data=request.wagtail_footer, charset=&quot;utf-8&quot;);</b><br> 50: server.wagtail_footer_cache_time = now();<br> 51: <br>
codePrintPlain
string47: request.wagtail_footer = "<" & 'cfprocessingdirective pageEncoding="utf-8"' & ">#chr(10)#"; 48: request.wagtail_footer &= reMatchNoCase("<footer[^>]*?>.+?</footer>", response.filecontent)[1]; 49: fileWrite(filePath=request.cacheWagtailFooterFile, data=request.wagtail_footer, charset="utf-8"); 50: server.wagtail_footer_cache_time = now(); 51:
column
number0
id
string??
line
number49
Raw_Trace
stringmassey.app_templates._pagetemplates._templatefiles.tmp_ot_wagtail.footer_auto_cfm$cf.call(/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/footer_auto.cfm:49)
template
string/var/www/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/footer_auto.cfm
type
stringcfml
2
Struct
codePrintHTML
string104: &lt;/main&gt;<br> 105: <br> <b>106: &lt;cfinclude template=&quot;./footer_auto.cfm&quot;&gt;</b><br> 107: <br> 108: &lt;/div&gt;<br>
codePrintPlain
string104: </main> 105: 106: <cfinclude template="./footer_auto.cfm"> 107: 108: </div>
column
number0
id
string??
line
number106
Raw_Trace
stringmassey.app_templates._pagetemplates._templatefiles.tmp_ot_wagtail.base_cfm$cf.call(/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/base.cfm:106)
template
string/var/www/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/base.cfm
type
stringcfml
3
Struct
codePrintHTML
string8: &lt;cfset directoryCreate(ExpandPath(&quot;/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/_js/cache/&quot;))&gt;<br> 9: &lt;/cfif&gt;<br> <b>10: &lt;cfinclude template=&quot;_templatefiles/#request.template_name#/base.cfm&quot; &gt;</b><br>
codePrintPlain
string8: <cfset directoryCreate(ExpandPath("/massey/app_templates/_pagetemplates/_templatefiles/tmp_OT_wagtail/_js/cache/"))> 9: </cfif> 10: <cfinclude template="_templatefiles/#request.template_name#/base.cfm" >
column
number0
id
string??
line
number10
Raw_Trace
stringmassey.app_templates._pagetemplates.tmp_ot_wagtail_cfm$cf.call(/massey/app_templates/_pagetemplates/tmp_OT_wagtail.cfm:10)
template
string/var/www/massey/app_templates/_pagetemplates/tmp_OT_wagtail.cfm
type
stringcfml
4
Struct
codePrintHTML
string327: &lt;/cfsavecontent&gt;<br> 328: &lt;/cfif&gt;<br> <b>329: &lt;cfinclude template=&quot;#request.sapi.site.getTemplate()#&quot;&gt;</b><br> 330: &lt;cfelse&gt;<br> 331: &lt;!--- presume if page_title doesn't exist that they are trying to view a page that does not exist in another language' ---&gt;<br>
codePrintPlain
string327: </cfsavecontent> 328: </cfif> 329: <cfinclude template="#request.sapi.site.getTemplate()#"> 330: <cfelse> 331: <!--- presume if page_title doesn't exist that they are trying to view a page that does not exist in another language' --->
column
number0
id
string??
line
number329
Raw_Trace
stringmassey.app_templates.index_cfm$cf.call(/massey/app_templates/index.cfm:329)
template
string/var/www/massey/app_templates/index.cfm
type
stringcfml
type
stringjava.io.IOException